All functions

adjust_projection_catcheco_jabba()

Calculate catch for projections based on JABBA outputs

adjust_projection_dbsra()

Adjust TAC based on DB-SRA outputs

adjust_projection_jabba()

Adjust FMSY based on JABBA outputs

bibtex2rmd()

Read bibtex to an Rmd file.

calc_soi()

Calculate status of an indicator over time

compare_projections_dbsra()

Compare projections from different DB-SRA cases

create_biodata()

Create biological data

create_fishery()

Create fishery from Ecopath with Ecosim (EwE) output data

create_survey()

Create survey from Ecopath with Ecosim (EwE) output data

cumd_norm()

Cumulative normal distribution

download_amo()

Download AMO data

download_ncei()

Download data from NOAA NCEI

generate_jabba()

Generate frequently used input data for JABBA

generate_ss3()

Generate frequently used input data for Stock Synthesis 3

logistic()

Compute various logistic patterns

read_ewe_effort()

Read in EwE fishing effort data and make figures

read_ewe_output()

Read in EwE output data and make figures

read_ewe_reference_points()

Read in EwE MSY reference points and make figures

read_ewe_reference_points_vec()

Extract EwE MSY reference points using catch over fishing effort multiplier table

read_fmsy_table()

Read in EwE MSY reference points summary table